Archive - июн 2010

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June 28th

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell - Summary: We present a suite of Unix shell programs for processing any number of phylogenetic trees of any size. They perform frequently-used tree operations without requiring user interaction.

Predicting post-translational lysine acetylation using support vector machines

Predicting post-translational lysine acetylation using support vector machines - Motivation: Lysine acetylation is a post-translational protein modification and a primary regulatory mechanism that controls many cell signaling processes.

Interactive software tool to comprehend the calculation of optimal sequence alignments with dynamic programming

Interactive software tool to comprehend the calculation of optimal sequence alignments with dynamic programming - Summary: Dynamic programming (DP) is a general optimization strategy that is successfully used across various disciplines of science.

Repitools: an R package for the analysis of enrichment-based epigenomic data

Repitools: an R package for the analysis of enrichment-based epigenomic data - Summary: Epigenetics, the study of heritable somatic phenotypic changes not related to DNA sequence, has emerged as a critical component of the landscape of gene regulation.

Semantic integration of data on transcriptional regulation

Semantic integration of data on transcriptional regulation - Motivation: Experimental and predicted data concerning gene transcriptional regulation are distributed among many heterogeneous sources.