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Recent blog posts
- Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be
- Active site prediction using evolutionary and structural information
- RNAsnoop: efficient target prediction for H/ACA snoRNAs
- ProteinWorldDB: querying radical pairwise alignments among protein sets from complete genomes
- Xper2: introducing e-taxonomy
- Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization
- A calibrated diversity assay for nucleic acid libraries using DiStRO--a Diversity Standard of Random Oligonucleotides
- Validation of double digest selective label database for sequenced prokaryotic genomes
- DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data
- PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches
Nucleic Acids Research
- Beyond Affymetrix arrays: expanding the set of known hybridization isotherms and observing pre-wash signal intensities
- New approach to real-time nucleic acids detection: folding polymerase chain reaction amplicons into a secondary structure to improve cleavage of Forster resonance energy transfer probes in 5'-nuclease assays
- Chimeric tRNAs as tools to induce proteome damage and identify components of stress responses
- In vitro selection of oligonucleotides that bind double-stranded DNA in the presence of triplex-stabilizing agents
- Toxin-antitoxin based transgene expression in mammalian cells
Bioinformatics
- BEDTools: a flexible suite of utilities for comparing genomic features
- iMotifs: an integrated sequence motif visualization and analysis environment
- FineStr: a web server for single-base-resolution nucleosome positioning
- XDIA: improving on the label-free data-independent analysis
- Filtering error from SOLiD Output
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