Syndicate
Navigation
User login
Recent blog posts
- Towards computational prediction of microRNA function and activity
- An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes
- Genome-wide functional element detection using pairwise statistical alignment outperforms multi-genome footprinting techniques
- Mining metabolic pathways through gene expression
- Integration of pathway knowledge into a weighted recursive feature elimination approach for cancer patients risk stratification
- Identifying compositionally homogeneous and nonhomogeneous domains within the human genome using a novel segmentation algorithm
- A Poisson model for random multigraphs
- A Bayesian approach using covariance of SNP data to detect differences in linkage disequilibrium patterns between groups
- Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
- Over-optimism in bioinformatics: an illustration
Nucleic Acids Research
- Identifying compositionally homogeneous and nonhomogeneous domains within the human genome using a novel segmentation algorithm
- A flexible and efficient template format for circular consensus sequencing and SNP detection
- Towards computational prediction of microRNA function and activity
- Zinc-finger nuclease-driven targeted integration into mammalian genomes using donors with limited chromosomal homology
- The synthetic integron: an in vivo genetic shuffling device
Bioinformatics
- An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes
- Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques
- First insight into the prediction of protein folding rate change upon point mutation
- Mining metabolic pathways through gene expression
- Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients
Archives
| Mon | Tue | Wed | Thu | Fri | Sat | Sun |
|---|---|---|---|---|---|---|
| 30 | 31 | 1 | 2 | 3 | 4 | 5 |
| 6 | 7 | 8 | 9 | 10 | 11 | 12 |
| 13 | 14 | 15 | 16 | 17 | 18 | 19 |
| 20 | 21 | 22 | 23 | 24 | 25 | 26 |
| 27 | 28 | 29 | 30 | 1 | 2 | 3 |
Who's online
There are currently 0 users and 1 guest online.
Archive - Feb 2010
February 7th
Validation of double digest selective label database for sequenced prokaryotic genomes
Submitted by bogdan on Sun, 2010-02-07 20:31Validation of double digest selective label database for sequenced prokaryotic genomes - Summary: A database for simulation of double digest selective label (DDSL) typing technique has been created and validated against a sequenced strain (Salmonella enterica serovar Typhimurium strain LT2).
DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data
Submitted by bogdan on Sun, 2010-02-07 20:30DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data - Summary: DNA copy number alterations (CNA) frequently underlie gene expression changes by increasing or decreasing gene dosage.
PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches
Submitted by bogdan on Sun, 2010-02-07 20:29Fortunately, R package developers finally got to the problem of parallel computations. An excerpt (below) from a recent Bioinformatics article is a good illustration.
webMGR: an online tool for the multiple genome rearrangement problem
Submitted by bogdan on Sun, 2010-02-07 20:27webMGR: an online tool for the multiple genome rearrangement problem - Summary: The algorithm MGR enables the reconstruction of rearrangement phylogenies based on gene or synteny block order in multiple genomes.
Tmod: toolbox of motif discovery
Submitted by bogdan on Sun, 2010-02-07 20:25Tmod: toolbox of motif discovery - Summary: Motif discovery is an important topic in computational transcriptional regulation studies.
Accurate recognition of cis-regulatory motifs with the correct lengths in prokaryotic genomes
Submitted by bogdan on Sun, 2010-02-07 20:23Accurate recognition of cis-regulatory motifs with the correct lengths in prokaryotic genomes - We present a new computational method for solving a classical problem, the identification problem of cis-regulatory motifs in a given set of promoter sequences, based on one key new idea.
Optimizing nucleotide sequence ensembles for combinatorial protein libraries using a genetic algorithm
Submitted by bogdan on Sun, 2010-02-07 20:21Optimizing nucleotide sequence ensembles for combinatorial protein libraries using a genetic algorithm - Protein libraries are essential to the field of protein engineering.