Archive - Nov 2010

Date
  • All
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
  • 9
  • 10
  • 11
  • 12
  • 13
  • 14
  • 15
  • 16
  • 17
  • 18
  • 19
  • 20
  • 21
  • 22
  • 23
  • 24
  • 25
  • 26
  • 27
  • 28
  • 29
  • 30

November 20th

PyETV: a PyMOL evolutionary trace viewer to analyze functional site predictions in protein complexes

PyETV: a PyMOL evolutionary trace viewer to analyze functional site predictions in protein complexes - Summary: PyETV is a PyMOL plugin for viewing, analyzing and manipulating predictions of evolutionarily important residues and sites in protein structures and their complexes.

Pre-calculated protein structure alignments at the RCSB PDB website

Pre-calculated protein structure alignments at the RCSB PDB website - Summary: With the continuous growth of the RCSB Protein Data Bank (PDB), providing an up-to-date systematic structure comparison of all protein structures poses an ever growing challenge.

The SMARTCyp cytochrome P450 metabolism prediction server

The SMARTCyp cytochrome P450 metabolism prediction server - Summary: The SMARTCyp server is the first web application for site of metabolism prediction of cytochrome P450-mediated drug metabolism.

R/qtl: high-throughput multiple QTL mapping

R/qtl: high-throughput multiple QTL mapping - Motivation: R/qtl is free and powerful software for mapping and exploring quantitative trait loci (QTL). R/qtl provides a fully comprehensive range of methods for a wide range of experimental cross types.

November 4th

PAR: a PARallel and distributed job crusher

PAR: a PARallel and distributed job crusher - Summary: Bioinformaticians are tackling increasingly computation-intensive tasks. In the meantime, workstations are shifting towards multi-core architectures and even massively multi-core may be the norm soon.

The binding site distance test score: a robust method for the assessment of predicted protein binding sites

The binding site distance test score: a robust method for the assessment of predicted protein binding sites - Motivation: We propose a novel method for scoring the accuracy of protein binding site predictions—the Binding-site Distance Test (BDT) score.

SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks

SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks - Summary: SpotXplore is a plugin for Cytoscape for extraction and visualization of differentially expressed subnetworks (hotspots) from gene networks.