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Recent blog posts
- Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature
- Predicting DNA recognition by Cys2His2 zinc finger proteins
- Discovery of phosphorylation motif mixtures in phosphoproteomics data
- Slider - maximum use of probability information for alignment of short sequence reads and SNP detection
- KEPE - a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors
- A novel procedure for genotyping of single nucleotide polymorphisms in trisomy with genomic DNA and the invader assay
- Identification and recovery of minor HIV-1 variants using the heteroduplex tracking assay and biotinylated probes
- Rapid and reliable universal cloning of influenza A virus genes by target-primed plasmid amplification
- Modeling genetic inheritance of copy number variations
- Identifying molecular markers associated with classification of genotypes by External Logistic Biplots
Nucleic Acids Research
- Nucleic Acids Research: VOLUME 36 ISSUE 22 2008
- Nucleic Acids Research
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- A novel procedure for genotyping of single nucleotide polymorphisms in trisomy with genomic DNA and the invader assay
- Identification and recovery of minor HIV-1 variants using the heteroduplex tracking assay and biotinylated probes
Bioinformatics
- KEPE--a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors
- Slider--maximum use of probability information for alignment of short sequence reads and SNP detection
- Discovery of phosphorylation motif mixtures in phosphoproteomics data
- Predicting DNA recognition by Cys2His2 zinc finger proteins
- Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature
Molecular cell biology
- Transcription by Moonlight: Structural Basis of an Extraribosomal Activity of Ribosomal Protein S10
- YAP and p73: A Complex Affair
- A New Window onto Translational Repression by Bacterial sRNAs
- Nucleolar Dominance and DNA Methylation Directed by Small Interfering RNA
- Found in Translation: Another RNA Helicase Function
PLOS Biology (top articles)
- Nutrient-Regulated Antisense and Intragenic RNAs Modulate a Signal Transduction Pathway in Yeast
- Activator Control of Nucleosome Occupancy in Activation and Repression of Transcription
- Towards an Integrated Framework for Assessing the Vulnerability of Species to Climate Change
- Identifying Neural Drivers with Functional MRI: An Electrophysiological Validation
- PKMζ Maintains Spatial, Instrumental, and Classically Conditioned Long-Term Memories
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Molecular cell biology
Transcription by Moonlight: Structural Basis of an Extraribosomal Activity of Ribosomal Protein S10
Robert A. Weisberg.
Categories: Biology
A New Window onto Translational Repression by Bacterial sRNAs
Jamie Richards, Joel G. Belasco.
Categories: Biology
Nucleolar Dominance and DNA Methylation Directed by Small Interfering RNA
Patrick Finigan, Robert A. Martienssen.
Categories: Biology
Found in Translation: Another RNA Helicase Function
Abigail L. Stevenson, John E.G. McCarthy.
Categories: Biology
Regulated Proteolysis of DNA Polymerase η during the DNA-Damage Response in C. elegans
Seung-Hwan Kim, W. Matthew Michael.
Categories: Biology
Mechanistic Insight into Site-Restricted Monoubiquitination of FANCD2 by Ube2t, FANCL, and FANCI
Arno F. Alpi, Paul E. Pace, M. Madan Babu, Ketan J. Patel.
Categories: Biology
HP1 Proteins Form Distinct Complexes and Mediate Heterochromatic Gene Silencing by Nonoverlapping Mechanisms
Mohammad R. Motamedi, Eun-Jin Erica Hong, Xue Li, Scott Gerber, Carilee Denison, Steven Gygi, Danesh Moazed.
Categories: Biology
Structural and Functional Analysis of the E. coli NusB-S10 Transcription Antitermination Complex
Xiao Luo, He-Hsuan Hsiao, Mikhail Bubunenko, Gert Weber, Donald L. Court, Max E. Gottesman, Henning Urlaub, Markus C. Wahl.
Categories: Biology
PML, YAP, and p73 Are Components of a Proapoptotic Autoregulatory Feedback Loop
Eleonora Lapi, Silvia Di Agostino, Sara Donzelli, Hilah Gal, Eytan Domany, Gideon Rechavi, Pier Paolo Pandolfi, David Givol, Sabrina Strano, Xin Lu, Giovanni Blandino.
Categories: Biology
A Fence-like Coat for the Nuclear Pore Membrane
Erik W. Debler, Yingli Ma, Hyuk-Soo Seo, Kuo-Chiang Hsia, Thomas R. Noriega, Günter Blobel, André Hoelz.
Categories: Biology
Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation
Marie Bouvier, Cynthia M. Sharma, Franziska Mika, Knud H. Nierhaus, Jörg Vogel.
Categories: Biology
Small-Molecule Inhibitors of HIF-2a Translation Link Its 5′UTR Iron-Responsive Element to Oxygen Sensing
Michael Zimmer, Benjamin L. Ebert, Christopher Neil, Keith Brenner, Ioannis Papaioannou, Antonia Melas, Nicola Tolliday, Justin Lamb, Kostas Pantopoulos, Todd Golub, Othon Iliopoulos.
Categories: Biology
Structure of a Complete Integrin Ectodomain in a Physiologic Resting State and Activation and Deactivation by Applied Forces
Jianghai Zhu, Bing-Hao Luo, Tsan Xiao, Chengzhong Zhang, Noritaka Nishida, Timothy A. Springer.
Categories: Biology
The Role of Dbf4/Drf1-Dependent Kinase Cdc7 in DNA-Damage Checkpoint Control
Toshiya Tsuji, Eric Lau, Gary G. Chiang, Wei Jiang.
Categories: Biology
Defining the Glycan Destruction Signal for Endoplasmic Reticulum-Associated Degradation
Erin M. Quan, Yukiko Kamiya, Daiki Kamiya, Vladimir Denic, Jimena Weibezahn, Koichi Kato, Jonathan S. Weissman.
Categories: Biology
A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters
Gwenael Badis, Esther T. Chan, Harm van Bakel, Lourdes Pena-Castillo, Desiree Tillo, Kyle Tsui, Clayton D. Carlson, Andrea J. Gossett, Michael J. Hasinoff, Christopher L. Warren, Marinella Gebbia, Shaheynoor Talukder, Ally Yang, Sanie Mnaimneh, Dimitri Terterov, David Coburn, Ai Li Yeo, Zhen Xuan Yeo, Neil D. Clarke, Jason D. Lieb, Aseem Z. Ansari, Corey Nislow, Timothy R. Hughes.
Categories: Biology
PHAPI, CAS, and Hsp70 Promote Apoptosome Formation by Preventing Apaf-1 Aggregation and Enhancing Nucleotide Exchange on Apaf-1
Hyun-Eui Kim, Xuejun Jiang, Fenghe Du, Xiaodong Wang.
Categories: Biology
Chk2 Suppresses the Oncogenic Potential of DNA Replication-Associated DNA Damage
Travis H. Stracker, Suzana S. Couto, Carlos Cordon-Cardo, Tulio Matos, John H.J. Petrini.
Categories: Biology
Cotranscriptional Recruitment of the mRNA Export Factor Yra1 by Direct Interaction with the 3′ End Processing Factor Pcf11
Sara Ann Johnson, Gabrielle Cubberley, David L. Bentley.
Categories: Biology