COTRASIF: submit HMM task

Select promoters collection: 

Input known TFBS sequences (one per line).
Sequences are allowed to contain only A, T, G, C symbols (no N's).
Sequences must have the same length and be aligned.

IMPORTANT:

this is not the place to paste promoter sequences!

Example already in the box: 8 experimentally identified ISREs (ISGF-3 TFBS).

If you only have a few sequences, which give you too many false-positives, you can complement these sequences with a PFM of the binding site you are looking for. If you do so, the algorithm will use neighbour nucleotides data from your sequences, and positional frequency data from the supplied PFM.
Note: if you do supply the PFM, then the length of sequences must be equal to the number of columns in the matrix supplied.

This field is optional.

Input position frequency matrix manually/copy-paste, or select one:
  (JASPAR?
  (TRANSFAC, info?
A
C
G
T

Specify similarity cut-off:
(if left equal to 0, will be automatically estimated)

Enter your e-mail

Important: if COTRASIF email is misplaced into the Spam folder, please mark the email as "Not spam".

E-mail will be used to send you the results when the computation is complete, and to identify your task results when running Conservation filter tool.
Your email will not be used for commercial mailings, and will not be made available to any third parties.

© Bogdan Tokovenko (2006 - 2011) and Rostyslav Golda (2008 - 2009)
Portions © Oleksiy Protas (2009)