HMM TFBS finder

Select organism: 

Input position frequency matrix manually/copy-paste or
using the JASPAR database:  
A
C
G
T
Sample PFM in the box above: ISRE.

Input sequences (one per line, no separators except for newline).
Sequences are allowed to contain only A, T, G, C symbols (no N's).

IMPORTANT:

this is not the place to paste promoter sequences!
At the moment, COTRASIF does not have functionality to scan a database of matrices against user-submitted sequence(s).

Example already in the box: ISRE sequences (note: the length of sequences is equal to the number of columns in the matrix; this is obligatory!).

Enter your e-mail: 

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E-mail will be used to send you the results when the computation is complete, and to identify your task results when running Conservation filter tool.
Your email will not be used for commercial mailings, and will not be made available to any third parties.

© 2007 - 2008
Bogdan Tokovenko, Rostyslav Golda, Protas Oleksiy.